Source: beast-mcmc
Standards-Version: 4.7.2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
 Andreas Tille <tille@debian.org>,
 Olivier Sallou <osallou@debian.org>,
Section: science
Priority: optional
Build-Depends:
 debhelper-compat (= 13),
 javahelper,
 ant,
 ant-optional,
 default-jdk,
 libjebl2-java,
 libjam-java,
 figtree,
 liboptions-java,
 libhmsbeagle-java,
 libcolt-free-java,
 libmpj-java,
 r-cran-rjava,
 libcommons-math-java,
 libjdom1-java,
 junit4,
 libmtj-java,
 libejml-java,
 libjlapack-java,
Vcs-Browser: https://salsa.debian.org/med-team/beast-mcmc
Vcs-Git: https://salsa.debian.org/med-team/beast-mcmc.git
Homepage: http://beast.bio.ed.ac.uk/
Rules-Requires-Root: no

Package: beast-mcmc
Architecture: all
Depends:
 ${shlibs:Depends},
 ${misc:Depends},
 libhmsbeagle-java,
 ${java:Depends},
 default-jre | java6-runtime,
 libnucleotidelikelihoodcore0 (>= ${source:Version}),
 libnucleotidelikelihoodcore0 (<< ${source:Version}.1~),
 libnetlib-java,
Description: Bayesian MCMC phylogenetic inference
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard
 analyses and a suit of programs for analysing the results.

Package: libnucleotidelikelihoodcore0
Architecture: any
Section: libs
Depends:
 ${shlibs:Depends},
 ${misc:Depends},
Conflicts:
 beast-mcmc-lib,
Provides:
 beast-mcmc-lib,
Replaces:
 beast-mcmc-lib,
Description: implementation of LikelihoodCore for nucleotides used by beast-mcmc
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard
 analyses and a suit of programs for analysing the results.
 .
 This package provides an implementation of LikelihoodCore for nucleotides
 that calls native methods for maximum speed.

Package: beast-mcmc-examples
Architecture: all
Multi-Arch: foreign
Section: doc
Depends:
 ${shlibs:Depends},
 ${misc:Depends},
Enhances:
 beast-mcmc,
Description: Bayesian MCMC phylogenetic inference - example data
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard
 analyses and a suit of programs for analysing the results.
 .
 This package contains the example data.
